Coding

Part:BBa_K2768006:Design

Designed by: Wenfei Yu   Group: iGEM18_USTC   (2018-09-18)


Pnao


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 1170
    Illegal BamHI site found at 1278
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 120
    Illegal NgoMIV site found at 465
    Illegal NgoMIV site found at 1083
    Illegal AgeI site found at 784
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 424
    Illegal BsaI.rc site found at 688


Design Notes

We did the codon optimization, referring to E.coli K12


Source

Pnao sequence https://www.ncbi.nlm.nih.gov/protein/WP_044040031.1?report=genpept; Pseudomonas putida S16 (strain: S16) genomic sequence: https://www.ncbi.nlm.nih.gov/nuccore/NC_015733.1?report=genbank


References